STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kkor_0507Sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: noc:Noc_1911 two component sigma-54 specific, fis family transcriptional regulator. (448 aa)    
Predicted Functional Partners:
Kkor_2291
Two component transcriptional regulator, Fis family; PFAM: response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; KEGG: spe:Spro_4883 nitrogen regulation protein NR(I).
 
     0.917
Kkor_0230
CheA signal transduction histidine kinase; PFAM: response regulator receiver; CheW domain protein; Hpt domain protein; Signal transducing histidine kinase homodimeric; ATP-binding region ATPase domain protein; SMART: response regulator receiver; Hpt domain protein; CheW domain protein; ATP-binding region ATPase domain protein; KEGG: abo:ABO_0104 two-component hybrid chemotactic sensor and regulator, putative.
  
 
 0.795
Kkor_0648
RNA polymerase, sigma 54 subunit, RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.795
Kkor_0839
Hpt sensor hybrid histidine kinase; KEGG: hch:HCH_01804 signal transduction histidine kinase; PFAM: response regulator receiver; Hpt domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein.
  
 
 0.663
Kkor_2290
Signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: maq:Maqu_0767 signal transduction histidine kinase, nitrogen specific, NtrB.
 
 0.638
Kkor_0803
KEGG: ajs:Ajs_0088 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein.
  
 
 0.540
Kkor_2477
Histidine kinase; KEGG: aeh:Mlg_0158 periplasmic sensor signal transduction histidine kinase; TIGRFAM: PEP-CTERM system histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein.
 
 
 
 0.484
Kkor_0506
PFAM: Peptidase M11 gametolysin; KEGG: she:Shewmr4_0529 peptidase M11, gametolysin.
       0.465
Kkor_1051
KEGG: tgr:Tgr7_3153 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; extracellular solute-binding protein family 3; SMART: EAL domain protein; GGDEF domain containing protein; extracellular solute-binding protein family 3.
  
 
 0.437
Kkor_0229
MCP methyltransferase, CheR-type; KEGG: hch:HCH_00542 methylase of chemotaxis methyl- accepting protein; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type.
 
  
 0.423
Your Current Organism:
Kangiella koreensis
NCBI taxonomy Id: 523791
Other names: K. koreensis DSM 16069, Kangiella koreensis DSM 16069, Kangiella koreensis JCM 12318, Kangiella koreensis KCTC 12183, Kangiella koreensis SW-125, Kangiella koreensis str. DSM 16069, Kangiella koreensis strain DSM 16069
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.