STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kkor_0530PFAM: Saccharopine dehydrogenase; KEGG: swd:Swoo_2343 saccharopine dehydrogenase. (373 aa)    
Predicted Functional Partners:
Kkor_0529
KEGG: swd:Swoo_2342 hypothetical protein.
 
     0.911
Kkor_0528
KEGG: swd:Swoo_2341 NAD-dependent epimerase/dehydratase.
 
   
 0.841
Kkor_0527
KEGG: swd:Swoo_0028 hypothetical protein.
       0.780
Kkor_0574
PFAM: putative thiol-disulphide oxidoreductase DCC; KEGG: pst:PSPTO_4436 hypothetical protein.
 
     0.585
Kkor_0531
TIGRFAM: elongation factor P-like protein YeiP; PFAM: Elongation factor P; Elongation factor P/YeiP protein; Elongation factor KOW domain protein; KEGG: plu:plu2861 elongation factor P.
       0.571
Kkor_0526
PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: pca:Pcar_0172 catalytic LigB subunit of aromatic ring-opening dioxygenase.
     
 0.538
Kkor_1355
KEGG: shn:Shewana3_4144 plastocyanin domain- containing protein.
  
     0.417
Kkor_1305
KEGG: ilo:IL1217 plastocyanin domain-containing protein.
  
     0.409
Kkor_1828
TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; Orn/DAP/Arg decarboxylase 2; amino acid-binding ACT domain protein; KEGG: lpf:lpl1775 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
  
 0.403
Your Current Organism:
Kangiella koreensis
NCBI taxonomy Id: 523791
Other names: K. koreensis DSM 16069, Kangiella koreensis DSM 16069, Kangiella koreensis JCM 12318, Kangiella koreensis KCTC 12183, Kangiella koreensis SW-125, Kangiella koreensis str. DSM 16069, Kangiella koreensis strain DSM 16069
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