STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kkor_1430Sigma 54 interacting domain protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sat:SYN_00283 ABC transporter ATP-binding protein. (252 aa)    
Predicted Functional Partners:
Kkor_1429
PFAM: protein of unknown function DUF214; KEGG: sme:SMa1122 putative permease.
 
 
 0.984
Kkor_1428
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sme:SMa1124 membrane protein.
 
 
 0.969
Kkor_1949
KEGG: eca:ECA4391 dipeptide transporter ATP-binding subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
    
0.904
Kkor_1336
Molybdate ABC transporter, inner membrane subunit; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
    
 0.805
Kkor_2031
PFAM: protein of unknown function DUF214; KEGG: ppd:Ppro_0146 hypothetical protein.
 
 
 0.761
Kkor_1384
TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: maq:Maqu_1747 LolC/E family lipoprotein releasing system, transmembrane protein.
 
 
 0.727
Kkor_1948
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pmy:Pmen_0839 binding-protein-dependent transport systems inner membrane component.
 
      0.698
Kkor_2498
TIGRFAM: type VI secretion-associated protein, BMA_A0400 family; KEGG: sde:Sde_1521 GTP-binding.
  
    0.617
Kkor_2032
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: tbd:Tbd_1361 RND efflux membrane protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.525
Kkor_1427
Putative periplasmic ligand-binding sensor protein; KEGG: vfm:VFMJ11_A0291 GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CHASE domain protein; SMART: GGDEF domain containing protein.
       0.516
Your Current Organism:
Kangiella koreensis
NCBI taxonomy Id: 523791
Other names: K. koreensis DSM 16069, Kangiella koreensis DSM 16069, Kangiella koreensis JCM 12318, Kangiella koreensis KCTC 12183, Kangiella koreensis SW-125, Kangiella koreensis str. DSM 16069, Kangiella koreensis strain DSM 16069
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