STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kkor_1617KEGG: pha:PSHAa0344 hypothetical protein. (307 aa)    
Predicted Functional Partners:
Kkor_1618
Quinolinate synthetase complex, A subunit; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.
       0.723
Kkor_1219
KEGG: psa:PST_2102 hypothetical protein.
  
     0.695
Kkor_1939
SMART: Tetratricopeptide domain protein; KEGG: rce:RC1_0804 TPR domain protein.
  
     0.659
Kkor_0807
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sml:Smlt4003 putative TonB dependent receptor.
  
     0.630
Kkor_1154
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sde:Sde_3405 outer membrane protein.
  
     0.619
Kkor_2509
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: psa:PST_1245 TonB-dependent receptor protein.
  
     0.594
Kkor_2592
TIGRFAM: TonB family protein; KEGG: spc:Sputcn32_1521 TonB family protein.
  
    0.569
Kkor_1940
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
    0.547
Kkor_1101
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pha:PSHAa1987 TonB-dependent receptor protein.
  
     0.527
Kkor_2074
PFAM: peptidase M28; KEGG: amc:MADE_02720 putative glutamate carboxypeptidase II.
  
     0.519
Your Current Organism:
Kangiella koreensis
NCBI taxonomy Id: 523791
Other names: K. koreensis DSM 16069, Kangiella koreensis DSM 16069, Kangiella koreensis JCM 12318, Kangiella koreensis KCTC 12183, Kangiella koreensis SW-125, Kangiella koreensis str. DSM 16069, Kangiella koreensis strain DSM 16069
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.