STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kkor_1787Putative exonuclease RdgC; May be involved in recombination. Belongs to the RdgC family. (301 aa)    
Predicted Functional Partners:
Kkor_1786
KEGG: tmz:Tmz1t_1160 hypothetical protein.
  
    0.780
Kkor_1785
PFAM: Excinuclease ABC C subunit domain protein; KEGG: fph:Fphi_0656 endonuclease.
       0.561
Kkor_1577
TIGRFAM: sulfur relay protein TusC/DsrF; PFAM: DsrE family protein; KEGG: cja:CJA_1663 DsrE/DsrF-like family; Belongs to the DsrF/TusC family.
  
     0.547
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.541
Kkor_1788
PFAM: peptidylprolyl isomerase FKBP-type; FKBP-type peptidyl-prolyl isomerase domain protein; KEGG: amc:MADE_00743 FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase).
       0.505
rpsL
Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
   
    0.465
recX
Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family.
 
   
 0.458
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.457
Kkor_1576
TIGRFAM: sulfur relay protein TusD/DsrE; PFAM: DsrE family protein; KEGG: vok:COSY_0793 intracellular sulfur oxidation protein DsrE.
  
     0.418
Kkor_0641
PFAM: protein of unknown function DUF615; KEGG: ppw:PputW619_4274 hypothetical protein; Belongs to the UPF0307 family.
  
     0.405
Your Current Organism:
Kangiella koreensis
NCBI taxonomy Id: 523791
Other names: K. koreensis DSM 16069, Kangiella koreensis DSM 16069, Kangiella koreensis JCM 12318, Kangiella koreensis KCTC 12183, Kangiella koreensis SW-125, Kangiella koreensis str. DSM 16069, Kangiella koreensis strain DSM 16069
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