STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kkor_2238PFAM: Sporulation domain protein; KEGG: plu:plu0088 hypothetical protein. (409 aa)    
Predicted Functional Partners:
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
  
    0.858
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
  
    0.775
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
       0.583
Kkor_2241
TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; Secretin/TonB short domain; NolW domain protein; KEGG: tgr:Tgr7_3028 type IV pilus secretin PilQ.
       0.568
Kkor_2242
PFAM: Pilus assembly protein PilP; KEGG: pfo:Pfl01_0408 pilus assembly protein, PilQ.
       0.546
Kkor_2243
PFAM: Pilus assembly protein PilO; KEGG: psa:PST_0555 type 4 fimbrial biogenesis protein PilO.
       0.546
Kkor_2244
PFAM: Fimbrial assembly family protein; KEGG: pau:PA14_66650 type 4 fimbrial biogenesis protein PilN.
       0.546
Kkor_2245
TIGRFAM: type IV pilus assembly protein PilM; KEGG: maq:Maqu_0826 type IV pilus assembly protein PilM.
       0.546
Kkor_2236
PFAM: alpha/beta hydrolase fold; KEGG: swd:Swoo_0670 alpha/beta hydrolase fold.
       0.538
nusA
NusA antitermination factor; Participates in both transcription termination and antitermination.
  
    0.413
Your Current Organism:
Kangiella koreensis
NCBI taxonomy Id: 523791
Other names: K. koreensis DSM 16069, Kangiella koreensis DSM 16069, Kangiella koreensis JCM 12318, Kangiella koreensis KCTC 12183, Kangiella koreensis SW-125, Kangiella koreensis str. DSM 16069, Kangiella koreensis strain DSM 16069
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.