STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kkor_2561PFAM: Uracil-DNA glycosylase superfamily; KEGG: ilo:IL2499 uracil-DNA glycosylase. (199 aa)    
Predicted Functional Partners:
Kkor_2560
KEGG: tcx:Tcr_1907 divalent heavy-metal cations transporter.
       0.778
Kkor_2562
PFAM: pseudouridine synthase; KEGG: sse:Ssed_1515 pseudouridine synthase.
  
    0.739
Kkor_1245
KEGG: vfm:VFMJ11_0551 oxaloacetate decarboxylase alpha subunit; TIGRFAM: oxaloacetate decarboxylase alpha subunit; PFAM: Conserved carboxylase region; pyruvate carboxyltransferase; biotin/lipoyl attachment domain- containing protein.
  
    0.594
Kkor_1042
PFAM: peptidase M22 glycoprotease; KEGG: swd:Swoo_2105 peptidase M22 glycoprotease.
  
    0.570
rsmJ
Protein of unknown function DUF548; Specifically methylates the guanosine in position 1516 of 16S rRNA.
       0.555
Kkor_2111
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
   
   0.504
Kkor_2564
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: amc:MADE_03907 peptidyl-prolyl cis-trans isomerase C.
       0.437
Your Current Organism:
Kangiella koreensis
NCBI taxonomy Id: 523791
Other names: K. koreensis DSM 16069, Kangiella koreensis DSM 16069, Kangiella koreensis JCM 12318, Kangiella koreensis KCTC 12183, Kangiella koreensis SW-125, Kangiella koreensis str. DSM 16069, Kangiella koreensis strain DSM 16069
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.