STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lebu_1010PFAM: peptidase U32; KEGG: fnu:FN1931 protease. (760 aa)    
Predicted Functional Partners:
Lebu_1012
KEGG: fnu:FN0282 hypothetical protein.
 
     0.625
Lebu_1011
KEGG: fma:FMG_0457 hypothetical protein.
       0.574
Lebu_0631
PFAM: O-methyltransferase family 3; KEGG: fnu:FN0314 caffeoyl-CoA O-methyltransferase.
  
  
 0.556
Lebu_1254
PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: cdf:CD2479 hypothetical protein.
  
     0.518
rimM
16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.
  
    0.492
Lebu_1013
PFAM: PTS system fructose subfamily IIA component; KEGG: fnu:FN1842 dihydroxyacetone kinase phosphotransfer protein.
       0.490
trmD
tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
  
    0.470
Lebu_1009
KEGG: efa:EF0702 hypothetical protein.
       0.403
Your Current Organism:
Leptotrichia buccalis
NCBI taxonomy Id: 523794
Other names: L. buccalis C-1013-b, Leptotrichia buccalis C-1013-b
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