Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Lebu_1069KEGG: cbb:CLD_2403 hypothetical protein. (641 aa)    
Predicted Functional Partners:
Lebu_1070
PFAM: protein of unknown function DUF324; KEGG: cbb:CLD_2404 CRISPR-associated RAMP protein.
 
 
 0.991
Lebu_1072
PFAM: protein of unknown function DUF324; KEGG: cth:Cthe_2051 CRISPR-associated Csm3 family protein.
 
 
 0.981
Lebu_1073
PFAM: protein of unknown function DUF324; KEGG: ana:all1474 hypothetical protein.
 
 
 0.980
Lebu_1075
KEGG: rca:Rcas_3289 hypothetical protein.
 
     0.913
Lebu_1099
TIGRFAM: CRISPR-associated protein DxTHG motif; KEGG: mja:MJ1674 hypothetical protein.
 
   
 0.704
Lebu_1071
Hypothetical protein; KEGG: CG32662.
       0.697
Lebu_1074
Hypothetical protein; KEGG: hsm:HSM_1182 nucleic acid-binding protein.
       0.614
Lebu_1076
KEGG: mvn:Mevan_0113 hypothetical protein.
       0.568
Lebu_1068
Hypothetical protein.
       0.545
Lebu_1090
KEGG: tex:Teth514_1839 hypothetical protein.
 
     0.539
Your Current Organism:
Leptotrichia buccalis
NCBI taxonomy Id: 523794
Other names: L. buccalis C-1013-b, Leptotrichia buccalis C-1013-b
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