STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lebu_1594KEGG: fnu:FN1986 hypothetical protein. (391 aa)    
Predicted Functional Partners:
Lebu_1595
KEGG: fnu:FN1986 hypothetical protein.
      
0.651
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.625
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.603
Lebu_1592
TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin Txe/YoeB; KEGG: ckl:CKL_2072 hypothetical protein.
       0.570
Lebu_1593
Protein of unknown function DUF172; Antitoxin component of a type II toxin-antitoxin (TA) system.
       0.570
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.522
Lebu_1888
Hypothetical protein.
    
 
 0.521
Lebu_1591
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: cpr:CPR_0236 DnaJ domain-containing protein.
  
    0.401
Your Current Organism:
Leptotrichia buccalis
NCBI taxonomy Id: 523794
Other names: L. buccalis C-1013-b, Leptotrichia buccalis C-1013-b
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