STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lebu_1981PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: fnu:FN0242 potassium transporter peripheral membrane component. (452 aa)    
Predicted Functional Partners:
Lebu_1982
PFAM: cation transporter; KEGG: fnu:FN0993 trk system potassium uptake protein TrkG.
 
 
 0.976
Lebu_1980
Porphobilinogen synthase; PFAM: delta-aminolevulinic acid dehydratase; KEGG: fnu:FN0460 delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
       0.664
Lebu_1979
Ferrochelatase; KEGG: fnu:FN0539 ferrochelatase.
       0.661
Lebu_0427
Potassium uptake protein, TrkH family; KEGG: fnu:FN1725 potassium uptake protein KtrB; TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter.
  
 
 0.597
Lebu_0028
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: fnu:FN0644 uroporphyrinogen-III synthase.
  
    0.512
Lebu_0381
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: fnu:FN1170 pyruvate-flavodoxin oxidoreductase.
  
 
 0.500
Lebu_1978
PFAM: Phosphoglycerate mutase; KEGG: fnu:FN0911 alpha-ribazole-5'-phosphate phosphatase.
  
    0.450
Your Current Organism:
Leptotrichia buccalis
NCBI taxonomy Id: 523794
Other names: L. buccalis C-1013-b, Leptotrichia buccalis C-1013-b
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