STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yaeHHypothetical protein; Psort location: Cytoplasmic, score: 8.96; locus tag in AE006468 is STM0211; yaeH; Belongs to the UPF0325 family. (128 aa)    
Predicted Functional Partners:
ytfK
Hypothetical protein; Locus tag in AE006468 is STM4406; ytfK.
  
   
 0.716
yciN
Putative protein YciN; Locus tag in AE006468 is STM1715; yciN.
  
     0.700
viaA
Putative protein ViaA; Psort location: Cytoplasmic, score: 8.96; locus tag in AE006468 is STM3878; yieM.
  
     0.660
lppA
Repeated sequence found in lipoprotein LPP; Psort location: OuterMembrane, score: 10.00; locus tag in AE006468 is STM1377; lpp.
  
     0.623
rffT
ECA biosynthesis protein WzyE; Probably involved in the polymerization of enterobacterial common antigen (ECA) trisaccharide repeat units; Belongs to the WzyE family.
  
     0.615
hns
H-NS histone family protein; KEGG: hip:CGSHiEE_05540 3.9e-08 acetolactate synthase 3 catalytic subunit K03746; Psort location: Cytoplasmic, score: 9.97; locus tag in AE006468 is STM1751; hns; Belongs to the histone-like protein H-NS family.
  
    0.613
EHY69368.1
Hypothetical protein; KEGG: hip:CGSHiEE_02470 1.2e-15 pflA; pyruvate formate lyase-activating enzyme 1 K07286; locus tag in AE006468 is STM0445; yajG.
  
     0.612
ycfP
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96; locus tag in AE006468 is STM1210; ycfP; Belongs to the UPF0227 family.
  
     0.592
frsA
Putative esterase FrsA; Displays esterase activity toward pNP-butyrate.
  
     0.590
crl
Transcriptional regulator Crl; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family.
  
     0.585
Your Current Organism:
Salmonella enterica houtenae
NCBI taxonomy Id: 523831
Other names: S. enterica subsp. houtenae str. ATCC BAA-1581, Salmonella enterica subsp. houtenae str. ATCC BAA-1581
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.