STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ldcCOrn/Lys/Arg decarboxylase, major domain protein; KEGG: sea:SeAg_B0275 0. lysine decarboxylase, constitutive K01582; Psort location: Cytoplasmic, score: 9.97; locus tag in AE006468 is STM0234; ldcC. (713 aa)    
Predicted Functional Partners:
ygjG
Putrescine aminotransferase; Catalyzes the aminotransferase reaction from putrescine to 2- oxoglutarate, leading to glutamate and 4-aminobutanal, which spontaneously cyclizes to form 1-pyrroline. This is the first step in one of two pathways for putrescine degradation, where putrescine is converted into 4-aminobutanoate (gamma-aminobutyrate or GABA) via 4- aminobutanal. Also functions as a cadaverine transaminase in a a L- lysine degradation pathway to succinate that proceeds via cadaverine, glutarate and L-2-hydroxyglutarate.
   
 
 0.995
cadA
Orn/Lys/Arg decarboxylase, major domain protein; KEGG: ses:SARI_00317 0. hypothetical protein; K01582 lysine decarboxylase; Psort location: Cytoplasmic, score: 9.97; locus tag in AE006468 is STM2559; cadA.
  
  
 
0.990
lysA_1
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
 0.916
ravA
ATPase family; KEGG: sei:SPC_3964 2.2e-266 yieN; hypothetical protein; K03924 MoxR-like ATPase; Psort location: Cytoplasmic, score: 9.97; locus tag in AE006468 is STM3879; yieN.
   
 
 0.914
EHY69201.1
Glyoxalase family protein; KEGG: chu:CHU_2533 4.0e-45 gloA; lactoylglutathione lyase K08234; Psort location: Cytoplasmic, score: 8.96; locus tag in AE006468 is STM0235; yaeR.
  
  
 0.913
EHY71427.1
KEGG: sty:STY2590 5.5e-254 putative amino acid decarboxylase; K01586 diaminopimelate decarboxylase; Psort location: Cytoplasmic, score: 8.96; locus tag in AE006468 is STM2360.
    
 0.794
EHY69199.1
Chitinase class I; KEGG: swd:Swoo_1101 5.7e-165 chitinase; Psort location: Periplasmic, score: 9.84; locus tag in AE006468 is STM0233.
 
     0.617
cadB
Putative arginine/agmatine antiporter; KEGG: sds:SDEG_0016 5.6e-12 amino acid permease; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM2558; cadB.
 
  
 0.611
potE
Transporter, basic amino acid/polyamine antiporter family protein; Catalyzes both the uptake and excretion of putrescine. The uptake of putrescine is dependent on the membrane potential and the excretion involves putrescine-ornithine antiporter activity. Belongs to the amino acid-polyamine-organocation (APC) superfamily. Basic amino acid/polyamine antiporter (APA) (TC 2.A.3.2) family.
 
    0.545
tilS
tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.
       0.479
Your Current Organism:
Salmonella enterica houtenae
NCBI taxonomy Id: 523831
Other names: S. enterica subsp. houtenae str. ATCC BAA-1581, Salmonella enterica subsp. houtenae str. ATCC BAA-1581
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.