STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHY69201.1Glyoxalase family protein; KEGG: chu:CHU_2533 4.0e-45 gloA; lactoylglutathione lyase K08234; Psort location: Cytoplasmic, score: 8.96; locus tag in AE006468 is STM0235; yaeR. (129 aa)    
Predicted Functional Partners:
nifJ
KEGG: sew:SeSA_A1770 0. nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737; Psort location: CytoplasmicMembrane, score: 9.82; locus tag in AE006468 is STM1651; nifJ.
  
 
 0.977
ldcC
Orn/Lys/Arg decarboxylase, major domain protein; KEGG: sea:SeAg_B0275 0. lysine decarboxylase, constitutive K01582; Psort location: Cytoplasmic, score: 9.97; locus tag in AE006468 is STM0234; ldcC.
  
  
 0.913
cadA
Orn/Lys/Arg decarboxylase, major domain protein; KEGG: ses:SARI_00317 0. hypothetical protein; K01582 lysine decarboxylase; Psort location: Cytoplasmic, score: 9.97; locus tag in AE006468 is STM2559; cadA.
  
  
 0.837
ravA
ATPase family; KEGG: sei:SPC_3964 2.2e-266 yieN; hypothetical protein; K03924 MoxR-like ATPase; Psort location: Cytoplasmic, score: 9.97; locus tag in AE006468 is STM3879; yieN.
     
 0.830
EHY68623.1
KEGG: ses:SARI_04585 0. methylmalonyl-CoA mutase; K01847 methylmalonyl-CoA mutase; Psort location: Cytoplasmic, score: 8.96.
    
 0.777
EHY67737.1
Bacterial transferase hexapeptide repeat protein; KEGG: eci:UTI89_C3724 4.5e-85 yrdA; protein YrdA; locus tag in AE006468 is STM3399; yrdA.
 
    0.701
trpF
KEGG: spq:SPAB_01520 6.2e-230 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; K01609 indole-3-glycerol phosphate synthase K01817; locus tag in AE006468 is STM1725; trpC; Belongs to the TrpC family.
    
 0.668
nuoC
NADH dehydrogenase, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family.
  
  
 0.657
tilS
tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.
       0.638
sdhC
KEGG: sed:SeD_A0826 6.5e-45 sdhC; succinate dehydrogenase cytochrome b556 large membrane subunit; K00241 succinate dehydrogenase cytochrome b-556 subunit; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM0732; sdhC.
   
  
 0.589
Your Current Organism:
Salmonella enterica houtenae
NCBI taxonomy Id: 523831
Other names: S. enterica subsp. houtenae str. ATCC BAA-1581, Salmonella enterica subsp. houtenae str. ATCC BAA-1581
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.