STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ramATranscriptional activator RamA; KEGG: eat:EAT1b_1786 1.2e-11 transcriptional regulator, AraC family; Psort location: Cytoplasmic, score: 9.26; locus tag in AE006468 is STM0581. (113 aa)    
Predicted Functional Partners:
rhaR
AraC-like ligand binding domain protein; Activates expression of the rhaSR operon in response to L- rhamnose.
  
   0.763
rhaS
AraC-like ligand binding domain protein; Activates expression of the rhaBAD and rhaT operons.
 
 
 0.762
EHY70224.1
Transcriptional regulator, AraC family; KEGG: llm:llmg_0499 2.7e-14 adaA; methylphosphotriester-DNA alkyltransferase K10778; Psort location: Cytoplasmic, score: 8.96; locus tag in AE006468 is STM1355; ydiP.
  
   0.734
ykgD
Transcriptional regulator, AraC family; KEGG: sde:Sde_3619 1.9e-06 histidine kinase; Psort location: Cytoplasmic, score: 8.96.
  
     0.731
EHY67722.1
Transcriptional regulator, AraC family; KEGG: bay:RBAM_037970 6.2e-12 adaA; AdaA K10778; Psort location: Cytoplasmic, score: 9.97; locus tag in AE006468 is STM4117; yijO.
  
     0.687
nifJ
KEGG: sew:SeSA_A1770 0. nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737; Psort location: CytoplasmicMembrane, score: 9.82; locus tag in AE006468 is STM1651; nifJ.
     
 0.636
araC
AraC-like ligand binding domain protein; KEGG: eat:EAT1b_1786 1.2e-08 transcriptional regulator, AraC family; Psort location: Cytoplasmic, score: 9.97; locus tag in AE006468 is STM0104; araC.
  
   
 0.604
soxS_2
Transcriptional regulator, AraC family; KEGG: sde:Sde_3619 1.6e-32 histidine kinase; locus tag in AE006468 is STM0563.
  
     0.542
yjbR_1
Hypothetical protein; Locus tag in AE006468 is STM0579; ybdF.
       0.498
bm3R1
Transcriptional regulator, TetR family; Locus tag in AE006468 is STM0580.
       0.498
Your Current Organism:
Salmonella enterica houtenae
NCBI taxonomy Id: 523831
Other names: S. enterica subsp. houtenae str. ATCC BAA-1581, Salmonella enterica subsp. houtenae str. ATCC BAA-1581
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