STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yccSHypothetical protein; KEGG: ebr:ECB_03209 5.2e-29 yhfK; conserved inner membrane protein; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM1073; yccS. (717 aa)    
Predicted Functional Partners:
yccF
Putative inner membrane protein; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM1074; yccF.
  
  
 0.961
nifU
FeS cluster assembly scaffold IscU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
   
    0.579
yihD
Putative protein YihD; Locus tag in AE006468 is STM3995; yihD.
  
     0.546
yccT
Hypothetical protein; Locus tag in AE006468 is STM1077; yccT; Belongs to the UPF0319 family.
     
 0.542
yhhQ
Conserved hypothetical integral membrane protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.
  
     0.518
EHY69898.1
UvrD/REP helicase; KEGG: sei:SPC_2674 0. helD; helicase IV; K03658 DNA helicase IV; Psort location: Cytoplasmic, score: 9.26; locus tag in AE006468 is STM1075; helD.
       0.507
EHY69814.1
Tat pathway signal sequence; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM0938; ybjE.
  
     0.497
matP
Hypothetical protein; Required for spatial organization of the terminus region of the chromosome (Ter macrodomain) during the cell cycle. Prevents early segregation of duplicated Ter macrodomains during cell division. Binds specifically to matS, which is a 13 bp signature motif repeated within the Ter macrodomain.
  
   
 0.467
EHY67732.1
Putative inner membrane protein; KEGG: vfi:VF_2437 6.9e-18 yijD; hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM4128; yijD.
  
     0.421
frdC
Fumarate reductase subunit C; Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane.
  
     0.412
Your Current Organism:
Salmonella enterica houtenae
NCBI taxonomy Id: 523831
Other names: S. enterica subsp. houtenae str. ATCC BAA-1581, Salmonella enterica subsp. houtenae str. ATCC BAA-1581
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