STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHY70265.1Hypothetical protein; Locus tag in AE006468 is STM1402; sseE. (137 aa)    
Predicted Functional Partners:
EHY70264.1
Hypothetical protein; Locus tag in AE006468 is STM1401; sseD.
  
  
 0.990
EHY70262.1
Type III secretion low calcium response chaperone LcrH/SycD; Locus tag in AE006468 is STM1399; sscA.
  
  
 0.970
EHY70261.1
EspA-like secreted protein; Locus tag in AE006468 is STM1398; sseB.
  
    0.953
EHY70263.1
Secretion system effector C like family protein; KEGG: vfi:VF_0536 0.00067 alaS; alanyl-tRNA synthetase K01872; Psort location: Cytoplasmic, score: 8.96; locus tag in AE006468 is STM1400; sseC.
  
  
 0.931
prgK_2
Type III secretion apparatus lipoprotein, YscJ/HrcJ family; Psort location: OuterMembrane, score: 9.92; locus tag in AE006468 is STM1409; ssaJ.
  
  
 0.924
EHY70266.1
Type III secretion low calcium response chaperone LcrH/SycD; KEGG: ter:Tery_0416 1.7e-05 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099; locus tag in AE006468 is STM1403; sscB.
  
  
 0.895
EHY70259.1
Type III secretion apparatus protein, YscD/HrpQ family; Locus tag in AE006468 is STM1395; ssaD.
  
  
 0.888
EHY70275.1
Type III secretion effector delivery regulator, TyeA family; Psort location: Cytoplasmic, score: 8.96; locus tag in AE006468 is STM1412; ssaL.
  
  
 0.803
invG_2
Type III secretion outer membrane pore, YscC/HrcC family; Psort location: OuterMembrane, score: 10.00; locus tag in AE006468 is STM1394; ssaC.
  
  
 0.755
EHY70273.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.82; locus tag in AE006468 is STM1410.
  
  
 0.742
Your Current Organism:
Salmonella enterica houtenae
NCBI taxonomy Id: 523831
Other names: S. enterica subsp. houtenae str. ATCC BAA-1581, Salmonella enterica subsp. houtenae str. ATCC BAA-1581
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.