STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHY70283.1Type III secretion apparatus protein SpaR/YscT/HrcT; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM1421; ssaT. (259 aa)    
Predicted Functional Partners:
ssaR
Type III secretion apparatus protein, YscR/HrcR family; KEGG: bcm:Bcenmc03_5444 5.9e-44 type III secretion system protein K03226; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM1419; ssaR.
 
 
 0.997
EHY70284.1
Secretion system apparatus protein SsaU; KEGG: ccv:CCV52592_1722 6.2e-18 1-deoxy-D-xylulose-5-phosphate synthase K02401; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM1422; ssaU.
 
  
 0.997
ssas
Hypothetical protein; Locus tag in AE006468 is STM1420; ssaS.
  
 
 0.992
invG_2
Type III secretion outer membrane pore, YscC/HrcC family; Psort location: OuterMembrane, score: 10.00; locus tag in AE006468 is STM1394; ssaC.
 
 
 0.978
spaP
Type III secretion apparatus protein, YscR/HrcR family; Locus tag in AE006468 is STM2890; spaP.
 
 
 0.968
spaQ
Surface presentation of antigens protein SpaQ; Locus tag in AE006468 is STM2889; spaQ.
 
 
 0.963
prgK_2
Type III secretion apparatus lipoprotein, YscJ/HrcJ family; Psort location: OuterMembrane, score: 9.92; locus tag in AE006468 is STM1409; ssaJ.
 
 
 0.960
EHY70277.1
KEGG: ses:SARI_01567 1.0e-220 type III secretion system ATPase; K03224 ATP synthase in type III secretion protein SctN; Psort location: Cytoplasmic, score: 9.97; locus tag in AE006468 is STM1415; ssaN.
 
  
 0.955
ssaV
Type III secretion protein, HrcV family; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM1414; ssaV.
 
 
 0.953
ssaP
Hypothetical protein; Locus tag in AE006468 is STM1417; ssaP.
  
  
 0.944
Your Current Organism:
Salmonella enterica houtenae
NCBI taxonomy Id: 523831
Other names: S. enterica subsp. houtenae str. ATCC BAA-1581, Salmonella enterica subsp. houtenae str. ATCC BAA-1581
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.