STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHY70284.1Secretion system apparatus protein SsaU; KEGG: ccv:CCV52592_1722 6.2e-18 1-deoxy-D-xylulose-5-phosphate synthase K02401; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM1422; ssaU. (351 aa)    
Predicted Functional Partners:
EHY70283.1
Type III secretion apparatus protein SpaR/YscT/HrcT; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM1421; ssaT.
 
  
 0.997
ssaR
Type III secretion apparatus protein, YscR/HrcR family; KEGG: bcm:Bcenmc03_5444 5.9e-44 type III secretion system protein K03226; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM1419; ssaR.
 
  
 0.971
ssas
Hypothetical protein; Locus tag in AE006468 is STM1420; ssaS.
  
  
 0.965
ssaV
Type III secretion protein, HrcV family; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM1414; ssaV.
 
  
 0.949
spaR
Type III secretion apparatus protein SpaR/YscT/HrcT; Locus tag in AE006468 is STM2888; spaR.
 
  
 0.942
invA
Type III secretion system protein BsaQ; Locus tag in AE006468 is STM2896; invA.
 
  
 0.935
spaP
Type III secretion apparatus protein, YscR/HrcR family; Locus tag in AE006468 is STM2890; spaP.
 
  
 0.929
fliR
Flagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.
 
     0.911
ssaP
Hypothetical protein; Locus tag in AE006468 is STM1417; ssaP.
  
  
 0.891
EHY70259.1
Type III secretion apparatus protein, YscD/HrpQ family; Locus tag in AE006468 is STM1395; ssaD.
  
  
 0.890
Your Current Organism:
Salmonella enterica houtenae
NCBI taxonomy Id: 523831
Other names: S. enterica subsp. houtenae str. ATCC BAA-1581, Salmonella enterica subsp. houtenae str. ATCC BAA-1581
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.