STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydhLHypothetical protein; Locus tag in AE006468 is STM1438; ydhL. (79 aa)    
Predicted Functional Partners:
yfaE
2Fe-2S iron-sulfur cluster binding domain protein; KEGG: hiq:CGSHiGG_01415 2.1e-16 pheS; phenylalanyl-tRNA synthetase subunit alpha K11107; Psort location: Cytoplasmic, score: 8.96; locus tag in AE006468 is STM2279; yfaE.
  
     0.702
nrdB
KEGG: ses:SARI_00614 5.3e-201 nrdB; ribonucleotide-diphosphate reductase subunit beta; K00526 ribonucleoside-diphosphate reductase beta chain; Psort location: Cytoplasmic, score: 8.96; locus tag in AE006468 is STM2278; nrdB.
  
     0.658
yqjC
Putative protein YqjC; KEGG: nam:NAMH_0317 1.7e-05 putative H+-transporting two-sector ATPase, B/B' subunit; K02109 F-type H+-transporting ATPase subunit b; locus tag in AE006468 is STM3228; yqjC.
  
     0.653
nrdA
Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
  
     0.643
EHY70300.1
Oxidoreductase, aldo/keto reductase family protein; KEGG: sed:SeD_A1904 8.2e-157 oxidoreductase YdhF; Psort location: Cytoplasmic, score: 8.96; locus tag in AE006468 is STM1439; ydhF.
       0.613
syd
Syd protein; Interacts with the SecY protein in vivo. May bind preferentially to an uncomplexed state of SecY, thus functioning either as a chelating agent for excess SecY in the cell or as a regulatory factor that negatively controls the translocase function. Belongs to the Syd family.
  
     0.554
EHY70298.1
KEGG: bpm:BURPS1710b_A2293 7.6e-35 TetR family transcriptional regulator K00356; locus tag in AE006468 is STM1437; ydhM.
       0.544
yihI
Hypothetical protein; A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis. Belongs to the YihI family.
  
     0.541
yfbV
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM2336.
  
     0.532
EHY67793.1
Hypothetical protein; Locus tag in AE006468 is STM3456; yheV.
  
     0.489
Your Current Organism:
Salmonella enterica houtenae
NCBI taxonomy Id: 523831
Other names: S. enterica subsp. houtenae str. ATCC BAA-1581, Salmonella enterica subsp. houtenae str. ATCC BAA-1581
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.