STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHY70429.1Peroxiredoxin, OsmC family protein; KEGG: see:SNSL254_A1677 1.7e-69 peroxiredoxin OsmC K04063; Psort location: Cytoplasmic, score: 9.26; locus tag in AE006468 is STM1563; osmC. (143 aa)    
Predicted Functional Partners:
EHY70430.1
Hypothetical protein.
       0.773
EHY67189.1
CsbD-like protein; Psort location: Periplasmic, score: 9.83; locus tag in AE006468 is STM4240; yjbJ; Belongs to the UPF0337 (CsbD) family.
 
  
 0.709
dps
Ferritin-like domain protein; During stationary phase, binds the chromosome non- specifically, forming a highly ordered and stable dps-DNA co-crystal within which chromosomal DNA is condensed and protected from diverse damages. It protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral, which can be released after reduction. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction; Belongs to the Dps family.
  
  
 0.678
sra
30S ribosomal subunit S22; Psort location: Cytoplasmic, score: 9.26; locus tag in AE006468 is STM1565; rpsV.
  
    0.667
EHY68364.1
Hypothetical protein; KEGG: pfo:Pfl01_3969 2.2e-05 vesicle-fusing ATPase; locus tag in AE006468 is STM2802; ygaM.
   
    0.661
osmY-2
Putative osmotically-inducible protein Y; Locus tag in AE006468 is STM4561; osmY.
   
  
 0.647
EHY70431.1
Hypothetical protein.
       0.572
EHY70189.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
 
  
 0.557
elaB_2
Putative protein ElaB; KEGG: pfo:Pfl01_3969 7.0e-09 vesicle-fusing ATPase; locus tag in AE006468 is STM2311; elaB.
   
  
 0.557
ygaU
LysM domain protein; KEGG: atc:AGR_L_2132 0.0034 5'-nucleotidase; K01081 5'-nucleotidase; Psort location: Periplasmic, score: 9.83; locus tag in AE006468 is STM2795; ygaU.
   
  
 0.552
Your Current Organism:
Salmonella enterica houtenae
NCBI taxonomy Id: 523831
Other names: S. enterica subsp. houtenae str. ATCC BAA-1581, Salmonella enterica subsp. houtenae str. ATCC BAA-1581
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