STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
erfKErfK/YbiS/YcfS/YnhG; KEGG: bme:BMEI0848 5.6e-11 carnitine operon oxidoreductase CaiA K00257. (309 aa)    
Predicted Functional Partners:
EHY69267.1
Hypothetical protein; Locus tag in AE006468 is STM0312; yafK.
 
  
 0.840
EHY69871.1
Hypothetical protein; KEGG: hiq:CGSHiGG_02060 5.5e-76 kgd; hypothetical protein; locus tag in AE006468 is STM0995; ycbB.
 
  
 0.760
lppA
Repeated sequence found in lipoprotein LPP; Psort location: OuterMembrane, score: 10.00; locus tag in AE006468 is STM1377; lpp.
  
   
 0.642
EHY71076.1
Hypothetical protein; KEGG: sek:SSPA0797 1.4e-15 cobyric acid synthase; K02232 adenosylcobyric acid synthase.
       0.561
EHY68889.1
KEGG: stt:t3217 2.2e-250 D-alanyl-D-alanine carboxypeptidase/endopeptidase K07259; Psort location: Periplasmic, score: 9.76; locus tag in AE006468 is STM3300; dacB.
     
 0.539
EHY71081.1
Inner membrane family protein; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM2060; yeeA.
  
   
 0.517
EHY69550.1
Tat pathway signal sequence; KEGG: sei:SPC_0653 2.6e-215 dacA; D-alanine carboxypeptidase; K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Psort location: CytoplasmicMembrane, score: 9.97; locus tag in AE006468 is STM0637; dacA; Belongs to the peptidase S11 family.
    
 0.513
EHY69764.1
Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: set:SEN0809 5.0e-189 dacC; D-alanyl-D-alanine carboxypeptidase fraction C; K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Psort location: CytoplasmicMembrane, score: 9.82; locus tag in AE006468 is STM0863; dacC; Belongs to the peptidase S11 family.
    
 0.513
EHY71083.1
Beta-lactamase; KEGG: stm:STM2062 3.4e-206 dacD; D-alanyl-D-alanine carboxypeptidase K07258; Psort location: CytoplasmicMembrane, score: 9.99; locus tag in AE006468 is STM2062; dacD; Belongs to the peptidase S11 family.
    
 0.513
EHY71077.1
Hypothetical protein; KEGG: stm:STM2019 3.8e-49 cbiP; cobyric acid synthase; K02232 adenosylcobyric acid synthase.
       0.466
Your Current Organism:
Salmonella enterica houtenae
NCBI taxonomy Id: 523831
Other names: S. enterica subsp. houtenae str. ATCC BAA-1581, Salmonella enterica subsp. houtenae str. ATCC BAA-1581
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.