STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dusCTIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U16 in tRNAs. Belongs to the Dus family. DusC subfamily. (312 aa)    
Predicted Functional Partners:
fis
Transcriptional regulator, Fis family; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family.
  
  
 0.712
maiA
KEGG: sea:SeAg_B2322 4.3e-112 maiA; maleylacetoacetate isomerase; locus tag in AE006468 is STM2176.
   
   0.603
mhbM
FAD binding domain protein; KEGG: stt:t0680 8.6e-217 salicylate hydroxylase K00480; Psort location: Cytoplasmic, score: 8.96; locus tag in AE006468 is STM2175.
       0.599
EHY71192.1
FAH family protein; KEGG: reh:H16_B0874 7.4e-92 fumarylpyruvate hydrolase K01557; Psort location: Cytoplasmic, score: 8.96; locus tag in AE006468 is STM2177.
  
    0.596
tmcA
Acetyltransferase, GNAT family; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP).
   
  
 0.586
gtdA
KEGG: sew:SeSA_A2417 4.4e-190 gtdA; gentisate 1,2-dioxygenase K00450; Psort location: Cytoplasmic, score: 8.96; locus tag in AE006468 is STM2178.
       0.554
EHY71194.1
KEGG: tet:TTHERM_01080450 3.0e-20 Major Facilitator Superfamily protein; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM2179.
       0.539
panC
Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
  
    0.481
rluA
Pseudouridine synthase A; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
  
   
 0.441
EHY71187.1
KEGG: vap:Vapar_4267 7.5e-20 RND efflux system, outer membrane lipoprotein, NodT family; Psort location: OuterMembrane, score: 10.00; locus tag in AE006468 is STM2172; yohG.
      
 0.420
Your Current Organism:
Salmonella enterica houtenae
NCBI taxonomy Id: 523831
Other names: S. enterica subsp. houtenae str. ATCC BAA-1581, Salmonella enterica subsp. houtenae str. ATCC BAA-1581
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