STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygaVKEGG: reh:H16_A2208 4.8e-06 ArsR family transcriptional regulator; locus tag in AE006468 is STM2797. (99 aa)    
Predicted Functional Partners:
EHY68359.1
Rhodanese-like domain protein; KEGG: rba:RB11225 1.1e-24 hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.82; locus tag in AE006468 is STM2798; ygaP.
 
  
 0.884
nifJ
KEGG: sew:SeSA_A1770 0. nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737; Psort location: CytoplasmicMembrane, score: 9.82; locus tag in AE006468 is STM1651; nifJ.
     
 0.754
EHY68360.1
Hypothetical protein.
       0.622
copA
Copper-translocating P-type ATPase; KEGG: sty:STY0544 0. copA; copper exporting ATPase; K01533 Cu2+-exporting ATPase; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM0498; CopA.
  
  
 0.603
birA
biotin-[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
     
 0.533
nadR
Nicotinamide-nucleotide adenylyltransferase; Locus tag in AE006468 is STM4580; nadR.
   
 
 0.516
SBOV28191
Plasma membrane proteolipid 3 family protein; KEGG: uma:UM02098.1 5.8e-06 hypothetical protein; K01613 phosphatidylserine decarboxylase; Psort location: CytoplasmicMembrane, score: 9.82; locus tag in AE006468 is STM2796; yqaE.
       0.505
EHY69731.1
Citrate transporter; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM0836; ybiR.
  
  
 0.462
cobB
Transcriptional regulator, Sir2 family; KEGG: set:SEN1828 6.9e-144 NAD-dependent deacetylase K12410; Psort location: Cytoplasmic, score: 8.96; locus tag in AE006468 is STM1221; cobB; Belongs to the sirtuin family. Class III subfamily.
  
 
  0.450
ygaU
LysM domain protein; KEGG: atc:AGR_L_2132 0.0034 5'-nucleotidase; K01081 5'-nucleotidase; Psort location: Periplasmic, score: 9.83; locus tag in AE006468 is STM2795; ygaU.
     
 0.417
Your Current Organism:
Salmonella enterica houtenae
NCBI taxonomy Id: 523831
Other names: S. enterica subsp. houtenae str. ATCC BAA-1581, Salmonella enterica subsp. houtenae str. ATCC BAA-1581
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.