STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
casBCRISPR-associated protein, Cse2 family. (200 aa)    
Predicted Functional Partners:
cas5e
CRISPR-associated protein Cas5; Locus tag in AE006468 is STM2940.
 
 
 0.999
cas7e
CRISPR-associated protein, Cse4 family; Psort location: Cytoplasmic, score: 8.96; locus tag in AE006468 is STM2941; yghJ.
 
 
 0.999
casA
CRISPR-associated protein, Cse1 family.
 
 
 0.999
cas6e
CRISPR-associated protein, Cse3 family.
 
 
 0.991
EHY68490.1
CRISPR-associated protein Cas2; Locus tag in AE006468 is STM2937; ygbF.
 
   
 0.978
cas1
CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
  
 0.977
EHY68499.1
CRISPR-associated helicase Cas3; KEGG: noc:Noc_1642 0.0028 transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase).
 
  
 0.969
EHY70563.1
Hypothetical protein; Psort location: OuterMembrane, score: 10.00; locus tag in AE006468 is STM1669.
  
     0.414
EHY71427.1
KEGG: sty:STY2590 5.5e-254 putative amino acid decarboxylase; K01586 diaminopimelate decarboxylase; Psort location: Cytoplasmic, score: 8.96; locus tag in AE006468 is STM2360.
  
     0.411
Your Current Organism:
Salmonella enterica houtenae
NCBI taxonomy Id: 523831
Other names: S. enterica subsp. houtenae str. ATCC BAA-1581, Salmonella enterica subsp. houtenae str. ATCC BAA-1581
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.