STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csdEKEGG: see:SNSL254_A3211 1.9e-70 csdE; cysteine desulfurase, sulfur acceptor subunit CsdE K02426; Psort location: Cytoplasmic, score: 9.26; locus tag in AE006468 is STM2985; ygdK. (147 aa)    
Predicted Functional Partners:
csdA
KEGG: see:SNSL254_A3210 1.4e-209 csdA; cysteine desulfurase, catalytic subunit CsdA K01766; Psort location: Cytoplasmic, score: 9.97; locus tag in AE006468 is STM2984; csdA.
 0.995
sufS
Cysteine desulfurase/selenocysteine lyase; Cysteine desulfurases mobilize the sulfur from L-cysteine to yield L-alanine, an essential step in sulfur metabolism for biosynthesis of a variety of sulfur-containing biomolecules. Component of the suf operon, which is activated and required under specific conditions such as oxidative stress and iron limitation. Acts as a potent selenocysteine lyase in vitro, that mobilizes selenium from L- selenocysteine. Selenocysteine lyase activity is however unsure in vivo.
 0.871
sufB
FeS assembly protein SufB; Psort location: Cytoplasmic, score: 8.96; locus tag in AE006468 is STM1370; sufB.
 
 
 0.759
EHY70240.1
FeS assembly protein SufD; Psort location: Cytoplasmic, score: 8.96; locus tag in AE006468 is STM1372; sufD.
 
 
 0.663
EHY70239.1
KEGG: noc:Noc_2489 5.0e-86 FeS assembly ATPase SufC K09013; Psort location: Cytoplasmic, score: 9.97; locus tag in AE006468 is STM1371; sufC.
 
 
 0.658
rlmM
Hypothetical protein; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily.
 
    0.656
ygdD
Hypothetical protein; KEGG: hip:CGSHiEE_06720 9.5e-21 CTP synthetase; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM2981; ygdD.
  
    0.603
rarD
Protein RarD; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM2986.
       0.581
EHY68543.1
LysR substrate binding domain protein; KEGG: hiq:CGSHiGG_09680 1.7e-76 DNA-binding transcriptional activator GcvA K03566; Psort location: Cytoplasmic, score: 9.97; locus tag in AE006468 is STM2982; gcvA; Belongs to the LysR transcriptional regulatory family.
  
    0.509
ygdR_2
Hypothetical protein; Locus tag in AE006468 is STM2983; ygdI.
       0.499
Your Current Organism:
Salmonella enterica houtenae
NCBI taxonomy Id: 523831
Other names: S. enterica subsp. houtenae str. ATCC BAA-1581, Salmonella enterica subsp. houtenae str. ATCC BAA-1581
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.