STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygiQRadical SAM domain protein; KEGG: vfi:VF_1726 4.5e-259 ygiQ; hypothetical protein K03423; Psort location: Cytoplasmic, score: 8.96; locus tag in AE006468 is STM3168; ygiR. (723 aa)    
Predicted Functional Partners:
ftsP
Tat pathway signal sequence; Cell division protein that is required for growth during stress conditions. May be involved in protecting or stabilizing the divisomal assembly under conditions of stress; Belongs to the FtsP family.
       0.587
ubiA
4-hydroxybenzoate polyprenyl transferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
  
 
 0.535
plsC
Acyltransferase; KEGG: seh:SeHA_C3423 2.9e-129 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM3173; plsC.
 
     0.517
cmoM
Methyltransferase domain protein; Catalyzes the methylation of 5-carboxymethoxyuridine (cmo5U) to form 5-methoxycarbonylmethoxyuridine (mcmo5U) at position 34 in tRNAs; Belongs to the class I-like SAM-binding methyltransferase superfamily. CmoM family.
  
 
 0.469
EHY67475.1
Methyltransferase domain protein; Locus tag in AE006468 is STM4500; yjhP.
  
 
 0.445
potI
Putative spermidine/putrescine transport system permease protein PotC; KEGG: ecl:EcolC_2739 3.3e-137 ornithine carbamoyltransferase K11074; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM0880; potI.
   
  
 0.414
EHY68667.1
Putative oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.413
hemN
KEGG: stm:STM4004 6.6e-242 hemN; coproporphyrinogen III oxidase; K02495 oxygen-independent coproporphyrinogen III oxidase; Psort location: Cytoplasmic, score: 9.97; locus tag in AE006468 is STM4004; hemN; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.413
rlmL
THUMP domain protein; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family.
  
  
 0.403
Your Current Organism:
Salmonella enterica houtenae
NCBI taxonomy Id: 523831
Other names: S. enterica subsp. houtenae str. ATCC BAA-1581, Salmonella enterica subsp. houtenae str. ATCC BAA-1581
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