STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
panFSodium/pantothenate symporter; KEGG: hiq:CGSHiGG_00405 1.4e-33 cytidine deaminase K11928; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM3382; panF; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (483 aa)    
Predicted Functional Partners:
EHY68965.1
Hypothetical protein; KEGG: hiq:CGSHiGG_08445 3.1e-15 acetyl-CoA carboxylase biotin carboxylase subunit; Psort location: CytoplasmicMembrane, score: 9.82; locus tag in AE006468 is STM3381; yhdT.
 
  
 0.935
prmA
Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.
  
    0.761
EHY68981.1
Amino acid carrier protein; KEGG: pmj:P9211_06131 3.4e-71 Na+/alanine symporter K03310; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM0006; yaaJ.
  
     0.613
yigM
Carboxylate/Amino Acid/Amine Transporter; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM3963; yigM.
      
 0.613
accC
acetyl-CoA carboxylase, biotin carboxylase subunit; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
       0.561
accB
acetyl-CoA carboxylase, biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
       0.537
csrD
KEGG: ttu:TERTU_3984 1.7e-19 PAS sensor diguanylate cyclase/phophodiesterase; K00575 chemotaxis protein methyltransferase CheR K03412; Psort location: CytoplasmicMembrane, score: 9.82; locus tag in AE006468 is STM3375; yhdA.
      
 0.520
Your Current Organism:
Salmonella enterica houtenae
NCBI taxonomy Id: 523831
Other names: S. enterica subsp. houtenae str. ATCC BAA-1581, Salmonella enterica subsp. houtenae str. ATCC BAA-1581
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.