STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBOV34671Hypothetical protein; Locus tag in AE006468 is STM3400; yrdB. (85 aa)    
Predicted Functional Partners:
topA_1
Topoisomerase DNA-binding C4 zinc finger domain protein; KEGG: vsa:VSAL_I0079 3.3e-50 yrdD; DNA topoisomerase K07479; Psort location: Cytoplasmic, score: 8.96; locus tag in AE006468 is STM3403; yrdD.
     
 0.964
aroE
Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
  
  
 0.928
tsaC
Sua5/YciO/YrdC/YwlC family protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Catalyzes the conversion of L-threonine, HCO(3)(-)/CO(2) and ATP to give threonylcarbamoyl-AMP (TC-AMP) as the acyladenylate intermediate, with the release of diphosphate.
  
  
 0.870
yjjB
Hypothetical protein; Locus tag in AE006468 is STM4545.
      
 0.854
smg
Putative protein smg; Psort location: Cytoplasmic, score: 8.96; locus tag in AE006468 is STM3404; smg; Belongs to the Smg family.
       0.671
dprA
DNA protecting protein DprA; KEGG: hip:CGSHiEE_07040 1.3e-55 2-isopropylmalate synthase K04096; Psort location: Cytoplasmic, score: 8.96; locus tag in AE006468 is STM3405; smf.
       0.671
wcaC
Hypothetical protein; KEGG: eci:UTI89_C2331 1.9e-182 wcaC; putative glycosyl transferase; Psort location: Cytoplasmic, score: 8.96; locus tag in AE006468 is STM2113; wcaC.
  
   
 0.664
mlaB
Hypothetical protein; Locus tag in AE006468 is STM3309; yrbB.
  
     0.658
EHY67170.1
Hypothetical protein; Locus tag in AE006468 is STM4223; yjbF.
  
     0.636
EHY67602.1
Deoxyribose-phosphate aldolase; Cleaves 6-deoxy-6-sulfo-D-fructose 1-phosphate (SFP) to form dihydroxyacetone phosphate (DHAP) and 3-sulfolactaldehyde (SLA). Belongs to the aldolase LacD family.
  
     0.554
Your Current Organism:
Salmonella enterica houtenae
NCBI taxonomy Id: 523831
Other names: S. enterica subsp. houtenae str. ATCC BAA-1581, Salmonella enterica subsp. houtenae str. ATCC BAA-1581
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.