STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhjDKEGG: rop:ROP_63010 1.1e-44 putative ribonuclease K07058; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM3608; yhjD. (342 aa)    
Predicted Functional Partners:
EHY70536.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.82; locus tag in AE006468 is STM1646; ydbH.
 
     0.672
EHY68836.1
Hypothetical protein; Locus tag in AE006468 is STM3231; yqjK.
  
     0.638
mbtH
MbtH-like protein; Locus tag in AE006468 is STM0587; ybdZ.
  
     0.624
SBOV07541
Hypothetical protein; Locus tag in AE006468 is STM0823; ybiJ.
  
     0.622
EHY68101.1
Hypothetical protein; Locus tag in AE006468 is STM3810; yidQ.
  
     0.619
rof
Modulator of Rho-dependent transcription termination; Psort location: Cytoplasmic, score: 9.26; locus tag in AE006468 is STM0237; rof.
  
     0.607
EHY70801.1
Fimbrial protein.
  
     0.605
EHY68669.1
Hypothetical protein; Locus tag in AE006468 is STM3107; yggN.
  
     0.600
thiK
Thiamine kinase; Catalyzes the phosphorylation of thiamine to thiamine phosphate.
 
     0.594
EHY69970.1
Cytoplasmic chaperone TorD; KEGG: vfi:VF_A0083 2.3e-08 dmsD; twin-argninine leader-binding protein for DmsA and TorA K00397; Psort location: CytoplasmicMembrane, score: 9.82; locus tag in AE006468 is STM1137; ycdY.
  
     0.586
Your Current Organism:
Salmonella enterica houtenae
NCBI taxonomy Id: 523831
Other names: S. enterica subsp. houtenae str. ATCC BAA-1581, Salmonella enterica subsp. houtenae str. ATCC BAA-1581
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.