STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHY67955.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.86; locus tag in AE006468 is STM3647; yiaF. (236 aa)    
Predicted Functional Partners:
ynfB
Hypothetical protein; Locus tag in AE006468 is STM1503; ynfB; Belongs to the UPF0482 family.
  
   
 0.834
yedD
Hypothetical protein; Locus tag in AE006468 is STM1964; yedD.
      
 0.823
SBOV28261
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96; locus tag in AE006468 is STM2801; ygaC.
  
     0.773
ypfN
Hypothetical protein; Locus tag in AE006468 is STM2484.
  
     0.769
EHY69140.1
Hypothetical protein; Locus tag in AE006468 is STM0167; yacC.
  
     0.764
rcsF
Outer membrane lipoprotein; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family.
  
     0.764
EHY69865.1
Hypothetical protein; Locus tag in AE006468 is STM0989.
  
     0.759
EHY70536.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.82; locus tag in AE006468 is STM1646; ydbH.
  
     0.757
thiK
Thiamine kinase; Catalyzes the phosphorylation of thiamine to thiamine phosphate.
  
     0.754
EHY68669.1
Hypothetical protein; Locus tag in AE006468 is STM3107; yggN.
  
     0.750
Your Current Organism:
Salmonella enterica houtenae
NCBI taxonomy Id: 523831
Other names: S. enterica subsp. houtenae str. ATCC BAA-1581, Salmonella enterica subsp. houtenae str. ATCC BAA-1581
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.