STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
waaLO-antigen polymerase; KEGG: ses:SARI_03928 1.3e-204 hypothetical protein; K02847 O-antigen ligase; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM3713; rfaL. (404 aa)    
Predicted Functional Partners:
waaC
Lipopolysaccharide heptosyltransferase I; KEGG: ses:SARI_03929 2.6e-167 ADP-heptose:LPS heptosyl transferase I; K02841 heptosyltransferase I; locus tag in AE006468 is STM3712; rfaC.
  
 
 0.960
EHY68015.1
KEGG: seh:SeHA_C4036 3.3e-185 rfaF; ADP-heptose:LPS heptosyltransferase II K02843; Psort location: Cytoplasmic, score: 8.96; locus tag in AE006468 is STM3711; rfaF.
  
 
 0.959
waaI
Glycosyl transferase family 8; KEGG: stt:t3801 7.4e-179 waaI; lipopolysaccharide 1,3-galactosyltransferase; K03278 UDP-D-galactose:(glucosyl)LPS alpha-1,3-D-galactosyltransferase; Psort location: Cytoplasmic, score: 8.96; locus tag in AE006468 is STM3718; rfaI.
  
 
 0.939
rfaJ
Glycosyl transferase family 8; KEGG: see:SNSL254_A3997 1.5e-173 lipopolysaccharide 1,2-glucosyltransferase K03279; Psort location: Cytoplasmic, score: 8.96; locus tag in AE006468 is STM3717; rfaJ.
  
 
 0.914
rfaG
Glycosyltransferase, group 1 family; KEGG: spq:SPAB_04619 1.3e-199 hypothetical protein; K02844 UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase; Psort location: Cytoplasmic, score: 8.96; locus tag in AE006468 is STM3722; rfaG.
  
 
 0.885
hldD
ADP-glyceromanno-heptose 6-epimerase; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose; Belongs to the NAD(P)-dependent epimerase/dehydratase family. HldD subfamily.
     
 0.784
rfe
Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; Catalyzes the transfer of the GlcNAc-1-phosphate moiety from UDP-GlcNAc onto the carrier lipid undecaprenyl phosphate (C55-P), yielding GlcNAc-pyrophosphoryl-undecaprenyl (GlcNAc-PP-C55).
  
  
 0.783
rfaP
Lipopolysaccharide kinase family protein; Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core; Belongs to the protein kinase superfamily. KdkA/rfaP family.
  
 
 0.779
rfaK_1
Glycosyltransferase, group 1 family; KEGG: eck:EC55989_4090 3.8e-88 rfaK; lipopolysaccharide 1,2-N-acetylglucosaminetransferase K00713; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.761
EHY71105.1
NAD-binding domain 4; KEGG: vfi:VF_0191 6.8e-137 fnlA; UDP-N-acetylglucosamine 4,6-dehydratase K01726:K01795; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.736
Your Current Organism:
Salmonella enterica houtenae
NCBI taxonomy Id: 523831
Other names: S. enterica subsp. houtenae str. ATCC BAA-1581, Salmonella enterica subsp. houtenae str. ATCC BAA-1581
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.