STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yahACyclic diguanylate phosphodiesterase domain protein; KEGG: noc:Noc_1271 4.1e-29 hybrid signal transduction histidine kinase and diguanylate cyclase/phosphodiesterase; Psort location: CytoplasmicMembrane, score: 7.88. (252 aa)    
Predicted Functional Partners:
barA
ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein; KEGG: sei:SPC_3015 0. barA; sensor protein; K07678 two-component system, NarL family, sensor histidine kinase BarA; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM2958; barA.
 
 
 0.944
adrA
KEGG: vfi:VF_A0796 1.5e-29 adrA; GGDEF domain-containing protein K00936; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM0385; yaiC.
 
 0.940
arcB
PAS domain S-box; KEGG: sei:SPC_3398 0. arcB; aerobic respiration control sensor protein; K07648 two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM3328; arcB.
 
 0.932
EHY68307.1
Diguanylate cyclase domain protein; Locus tag in AE006468 is STM2672; yfiN.
 
 0.896
EHY71141.1
PAS domain S-box; KEGG: eci:UTI89_C2343 0. yegE; putative sensor protein; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM2123; yegE.
 
 0.885
EHY67536.1
Diguanylate cyclase domain protein; Locus tag in AE006468 is STM4551.
 
 0.873
EHY68118.1
TMAO reductase sytem sensor TorS; KEGG: set:SEN3642 0. torS; hybrid sensory histidine kinase TorS; K07647 two-component system, OmpR family, sensor histidine kinase TorS; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM3826; torS.
 
 
 0.848
ycdT_1
KEGG: vfi:VF_A0796 8.8e-26 adrA; GGDEF domain-containing protein K00936; Psort location: CytoplasmicMembrane, score: 8.46; locus tag in AE006468 is STM1987.
 
 0.812
dosC
KEGG: vfi:VF_A0692 6.1e-18 GGDEF domain-containing protein; Psort location: Cytoplasmic, score: 9.26; locus tag in AE006468 is STM1283; yeaJ.
 
 
 0.804
csrD
KEGG: ttu:TERTU_3984 1.7e-19 PAS sensor diguanylate cyclase/phophodiesterase; K00575 chemotaxis protein methyltransferase CheR K03412; Psort location: CytoplasmicMembrane, score: 9.82; locus tag in AE006468 is STM3375; yhdA.
 
 
 0.774
Your Current Organism:
Salmonella enterica houtenae
NCBI taxonomy Id: 523831
Other names: S. enterica subsp. houtenae str. ATCC BAA-1581, Salmonella enterica subsp. houtenae str. ATCC BAA-1581
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.