STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cidALrgA family protein; Locus tag in AE006468 is STM4271. (171 aa)    
Predicted Functional Partners:
EHY67224.1
Hypothetical protein; Locus tag in AE006468 is STM4272.
 
  
 0.984
EHY67223.1
LysR substrate binding domain protein; Locus tag in AE006468 is STM4270; Belongs to the LysR transcriptional regulatory family.
 
     0.896
yohK_1
Hypothetical protein; KEGG: bcz:BCZK3376 8.4e-29 murein hydrolase export regulator K01238; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM2182; yohK.
 
  
 0.880
Your Current Organism:
Salmonella enterica houtenae
NCBI taxonomy Id: 523831
Other names: S. enterica subsp. houtenae str. ATCC BAA-1581, Salmonella enterica subsp. houtenae str. ATCC BAA-1581
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.