STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjdNProtein PhnB; Locus tag in AE006468 is STM4288; phnB. (147 aa)    
Predicted Functional Partners:
EHY67249.1
Putative alkylphosphonate utilization operon protein PhnA; Locus tag in AE006468 is STM4289; phnA.
     
 0.927
EHY67246.1
Acetyltransferase, GNAT family; Locus tag in AE006468 is STM4287; phnO.
 
  
 0.808
nadR
Nicotinamide-nucleotide adenylyltransferase; Locus tag in AE006468 is STM4580; nadR.
   
    0.787
thiI
Thiamine biosynthesis/tRNA modification protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.
  
 
  0.709
EHY67247.1
Hypothetical protein.
       0.639
EHY70532.1
S-(hydroxymethyl)glutathione synthase; Locus tag in AE006468 is STM1643.
  
    0.601
EHY70577.1
Putative organophosphate reductase; KEGG: eci:UTI89_C0323 1.7e-133 2,5-diketo-D-gluconic acid reductase A; Psort location: Cytoplasmic, score: 9.97; locus tag in AE006468 is STM1676.
  
 
  0.471
dkgA
Oxidoreductase, aldo/keto reductase family protein; KEGG: stm:STM3165 9.5e-147 dkgA; 2,5-diketo-D-gluconate reductase A K06221; Psort location: Cytoplasmic, score: 9.97; locus tag in AE006468 is STM3165; yqhE.
  
 
  0.471
cobB
Transcriptional regulator, Sir2 family; KEGG: set:SEN1828 6.9e-144 NAD-dependent deacetylase K12410; Psort location: Cytoplasmic, score: 8.96; locus tag in AE006468 is STM1221; cobB; Belongs to the sirtuin family. Class III subfamily.
  
    0.455
yodD
Hypothetical protein; Locus tag in AE006468 is STM1984; yodD.
   
    0.408
Your Current Organism:
Salmonella enterica houtenae
NCBI taxonomy Id: 523831
Other names: S. enterica subsp. houtenae str. ATCC BAA-1581, Salmonella enterica subsp. houtenae str. ATCC BAA-1581
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