STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
melRTranscriptional regulator, AraC family; Locus tag in AE006468 is STM4297; melR. (333 aa)    
Predicted Functional Partners:
rhaR
AraC-like ligand binding domain protein; Activates expression of the rhaSR operon in response to L- rhamnose.
  
 
 0.821
EHY67258.1
Family 4 glycosyl hydrolase; Locus tag in AE006468 is STM4298; melA.
 
   
 0.810
araC
AraC-like ligand binding domain protein; KEGG: eat:EAT1b_1786 1.2e-08 transcriptional regulator, AraC family; Psort location: Cytoplasmic, score: 9.97; locus tag in AE006468 is STM0104; araC.
  
   
 0.750
soxS_2
Transcriptional regulator, AraC family; KEGG: sde:Sde_3619 1.6e-32 histidine kinase; locus tag in AE006468 is STM0563.
  
     0.721
cadC
Transcriptional regulatory protein; KEGG: rle:RL2429 5.6e-09 cya; putative adenylate cyclase; locus tag in AE006468 is STM2557; cadC.
  
     0.713
EHY70566.1
Bacterial transcription activator, effector binding domain protein; KEGG: cbb:CLD_0121 1.2e-08 methylphosphotriester-DNA alkyltransferase; Psort location: Cytoplasmic, score: 9.97; locus tag in AE006468 is STM1671.
  
     0.706
EHY70952.1
Hypothetical protein.
  
     0.705
rhaS
AraC-like ligand binding domain protein; Activates expression of the rhaBAD and rhaT operons.
 
 
 0.639
nifJ
KEGG: sew:SeSA_A1770 0. nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737; Psort location: CytoplasmicMembrane, score: 9.82; locus tag in AE006468 is STM1651; nifJ.
     
 0.636
soxS_3
Regulatory protein SoxS; Locus tag in AE006468 is STM4265; soxS.
  
     0.629
Your Current Organism:
Salmonella enterica houtenae
NCBI taxonomy Id: 523831
Other names: S. enterica subsp. houtenae str. ATCC BAA-1581, Salmonella enterica subsp. houtenae str. ATCC BAA-1581
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.