STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pmbATldD/PmbA family protein; Locus tag in AE006468 is STM4438; pmbA. (446 aa)    
Predicted Functional Partners:
tldD
TldD protein; KEGG: eci:UTI89_C3675 1.1e-239 tldD; protease TldD K03568; Psort location: Cytoplasmic, score: 9.26; locus tag in AE006468 is STM3368; tldD.
 
 
0.838
cybC
Cytochrome b562; Locus tag in AE006468 is STM4439; cybC.
       0.673
yjgA
Hypothetical protein; Locus tag in AE006468 is STM4437; yjgA; Belongs to the UPF0307 family.
  
    0.612
Your Current Organism:
Salmonella enterica houtenae
NCBI taxonomy Id: 523831
Other names: S. enterica subsp. houtenae str. ATCC BAA-1581, Salmonella enterica subsp. houtenae str. ATCC BAA-1581
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.