STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sufIMembrane protein Pan1. (421 aa)    
Predicted Functional Partners:
HFX_0508
Putative metal cation transporter.
 
   
 0.920
pcy
Copper-binding plastocyanin like protein.
 
 
   0.841
purE-2
NCAIR mutase (PurE)-related protein.
      
 0.603
nosD1
Copper-binding protein.
 
   
 0.571
hcp5-2
Halocyanin precursor-like protein.
 
 
   0.543
fbaB
Fructose-bisphosphate aldolase; Catalyzes a transaldol reaction between 6-deoxy-5- ketofructose 1-phosphate (DKFP) and L-aspartate semialdehyde (ASA) with an elimination of hydroxypyruvaldehyde phosphate to yield 2-amino-3,7- dideoxy-D-threo-hept-6-ulosonate (ADH). Plays a key role in an alternative pathway of the biosynthesis of 3-dehydroquinate (DHQ), which is involved in the canonical pathway for the biosynthesis of aromatic amino acids.
     
 0.505
spi
Serine protease inhibitor family protein; Belongs to the serpin family.
   
  0.483
ctaA
Cytochrome-c-aa3 oxidase assembly factor CtaA.
  
   
 0.445
HFX_0559
Hypothetical protein.
 
 
   0.431
norB
Cytochrome b subunit of nitric oxide reductase.
 
   
 0.429
Your Current Organism:
Haloferax mediterranei
NCBI taxonomy Id: 523841
Other names: H. mediterranei ATCC 33500, Haloferax mediterranei ATCC 33500, Haloferax mediterranei CGMCC 1.2087, Haloferax mediterranei JCM 8866, Haloferax mediterranei R-4, Haloferax mediterranei str. ATCC 33500, Haloferax mediterranei strain ATCC 33500
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.