Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HFX_0624 | HFX_0627 | HFX_0624 | HFX_0627 | Rpo operon protein. | Hypothetical protein. | 0.612 |
HFX_0624 | pfdB | HFX_0624 | HFX_0623 | Rpo operon protein. | Prefoldin beta subunit; Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding. | 0.714 |
HFX_0624 | rpl37AR | HFX_0624 | HFX_0626 | Rpo operon protein. | 50S ribosomal protein L37Ae; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL43 family. | 0.778 |
HFX_0624 | rpoP | HFX_0624 | HFX_0625 | Rpo operon protein. | DNA-directed RNA polymerase subunit P; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoP/eukaryotic RPC10 RNA polymerase subunit family. | 0.950 |
HFX_0627 | HFX_0624 | HFX_0627 | HFX_0624 | Hypothetical protein. | Rpo operon protein. | 0.612 |
HFX_0627 | HFX_0627A | HFX_0627 | HFX_0627A | Hypothetical protein. | Hypothetical protein. | 0.541 |
HFX_0627 | pfdB | HFX_0627 | HFX_0623 | Hypothetical protein. | Prefoldin beta subunit; Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding. | 0.505 |
HFX_0627 | rpl37AR | HFX_0627 | HFX_0626 | Hypothetical protein. | 50S ribosomal protein L37Ae; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL43 family. | 0.667 |
HFX_0627 | rpoP | HFX_0627 | HFX_0625 | Hypothetical protein. | DNA-directed RNA polymerase subunit P; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoP/eukaryotic RPC10 RNA polymerase subunit family. | 0.605 |
HFX_0627A | HFX_0627 | HFX_0627A | HFX_0627 | Hypothetical protein. | Hypothetical protein. | 0.541 |
pfdB | HFX_0624 | HFX_0623 | HFX_0624 | Prefoldin beta subunit; Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding. | Rpo operon protein. | 0.714 |
pfdB | HFX_0627 | HFX_0623 | HFX_0627 | Prefoldin beta subunit; Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding. | Hypothetical protein. | 0.505 |
pfdB | rpl37AR | HFX_0623 | HFX_0626 | Prefoldin beta subunit; Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding. | 50S ribosomal protein L37Ae; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL43 family. | 0.747 |
pfdB | rpoP | HFX_0623 | HFX_0625 | Prefoldin beta subunit; Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding. | DNA-directed RNA polymerase subunit P; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoP/eukaryotic RPC10 RNA polymerase subunit family. | 0.904 |
rpl37AR | HFX_0624 | HFX_0626 | HFX_0624 | 50S ribosomal protein L37Ae; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL43 family. | Rpo operon protein. | 0.778 |
rpl37AR | HFX_0627 | HFX_0626 | HFX_0627 | 50S ribosomal protein L37Ae; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL43 family. | Hypothetical protein. | 0.667 |
rpl37AR | pfdB | HFX_0626 | HFX_0623 | 50S ribosomal protein L37Ae; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL43 family. | Prefoldin beta subunit; Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding. | 0.747 |
rpl37AR | rpoP | HFX_0626 | HFX_0625 | 50S ribosomal protein L37Ae; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL43 family. | DNA-directed RNA polymerase subunit P; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoP/eukaryotic RPC10 RNA polymerase subunit family. | 0.789 |
rpoP | HFX_0624 | HFX_0625 | HFX_0624 | DNA-directed RNA polymerase subunit P; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoP/eukaryotic RPC10 RNA polymerase subunit family. | Rpo operon protein. | 0.950 |
rpoP | HFX_0627 | HFX_0625 | HFX_0627 | DNA-directed RNA polymerase subunit P; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoP/eukaryotic RPC10 RNA polymerase subunit family. | Hypothetical protein. | 0.605 |
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