STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
livG-6Branched-chain amino acid ABC transporter ATP-binding protein. (268 aa)    
Predicted Functional Partners:
livM-5
Branched-chain amino acid ABC transporter permease protein.
  
 0.993
livH-6
Branched chain amino acid transporter permease protein.
 
  
 0.977
livK-2
Amino acid-binding protein.
 
  
 0.948
livF-6
Branched-chain amino acid ABC transporter ATP-binding protein.
 
  
0.934
livM-3
Branched-chain amino acid ABC transporter permease protein.
  
 0.928
livM
ABC-type branched-chain amino acid transport system, permease protein II.
  
 0.882
livH
ABC-type branched-chain amino acid transport system, permease protein I.
 
  
 0.869
livH-3
Branched-chain amino acid ABC transporter permease protein.
  
 0.855
livK
Leucine/isoleucine/valine-binding protein.
 
  
 0.843
livJ-2
ABC-type branched-chain amino acid transport systems, substrate-binding protein.
 
  
 0.820
Your Current Organism:
Haloferax mediterranei
NCBI taxonomy Id: 523841
Other names: H. mediterranei ATCC 33500, Haloferax mediterranei ATCC 33500, Haloferax mediterranei CGMCC 1.2087, Haloferax mediterranei JCM 8866, Haloferax mediterranei R-4, Haloferax mediterranei str. ATCC 33500, Haloferax mediterranei strain ATCC 33500
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