STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HFX_1389Hypothetical protein. (311 aa)    
Predicted Functional Partners:
nikR-2
Transcriptional regulator.
 
     0.720
HFX_2114
Hypothetical protein.
  
     0.697
HFX_1324
Hypothetical protein.
  
     0.665
HFX_2679
HTH DNA binding domain-containing protein.
  
     0.638
HFX_2493
Hypothetical protein.
  
     0.622
mcm2
Replicative DNA helicase / cell division control protein 21 /MCM; Belongs to the MCM family.
  
     0.613
HFX_0586
4-hydroxybenzoate polyprenyltransferase-like prenyltransferase.
  
     0.605
HFX_1259
Protein of unknown function DUF6 transmembrane.
  
     0.587
HFX_1388
Alkylhydroperoxidase like protein, AhpD family.
 
     0.506
HFX_2161
Transcription regulator.
  
     0.488
Your Current Organism:
Haloferax mediterranei
NCBI taxonomy Id: 523841
Other names: H. mediterranei ATCC 33500, Haloferax mediterranei ATCC 33500, Haloferax mediterranei CGMCC 1.2087, Haloferax mediterranei JCM 8866, Haloferax mediterranei R-4, Haloferax mediterranei str. ATCC 33500, Haloferax mediterranei strain ATCC 33500
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.