Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
adk | pepF | HFX_2510 | HFX_1930 | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. | Oligoendopeptidase. | 0.499 |
adk | purB | HFX_2510 | HFX_1092 | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. | Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. | 0.960 |
adk | tmk | HFX_2510 | HFX_2264 | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. | dTMP kinase. | 0.550 |
fumC | pepF | HFX_2897 | HFX_1930 | Fumarate hydratase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | Oligoendopeptidase. | 0.420 |
fumC | purB | HFX_2897 | HFX_1092 | Fumarate hydratase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. | 0.543 |
gdh | pepF | HFX_1090 | HFX_1930 | Glucose 1-dehydrogenase; Catalyzes the NAD(P)(+)-dependent oxidation of D-glucose to D-gluconate. Displays broad substrate specificity since it is able to catalyze the oxidation of a number of alternative aldose sugars, such as D-xylose, D-galactose, and D-fucose, to the corresponding glyconate. Can utilize both NAD(+) and NADP(+) as electron acceptor, with a preference for NADP(+). Physiologically, seems to be involved in the degradation of glucose through a modified Entner-Doudoroff pathway. | Oligoendopeptidase. | 0.455 |
gdh | purB | HFX_1090 | HFX_1092 | Glucose 1-dehydrogenase; Catalyzes the NAD(P)(+)-dependent oxidation of D-glucose to D-gluconate. Displays broad substrate specificity since it is able to catalyze the oxidation of a number of alternative aldose sugars, such as D-xylose, D-galactose, and D-fucose, to the corresponding glyconate. Can utilize both NAD(+) and NADP(+) as electron acceptor, with a preference for NADP(+). Physiologically, seems to be involved in the degradation of glucose through a modified Entner-Doudoroff pathway. | Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. | 0.703 |
hisS | pepF | HFX_1937 | HFX_1930 | histidyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | Oligoendopeptidase. | 0.476 |
hisS | tmk | HFX_1937 | HFX_2264 | histidyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | dTMP kinase. | 0.447 |
hisS | uvrD | HFX_1937 | HFX_0382 | histidyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | DNA helicase II / ATP-dependent DNA helicase PcrA. | 0.481 |
iap-2 | pepF | HFX_1931 | HFX_1930 | Putative aminopeptidase. | Oligoendopeptidase. | 0.468 |
metA | pepF | HFX_3014 | HFX_1930 | Homoserine O-acetyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine. | Oligoendopeptidase. | 0.467 |
pepF | adk | HFX_1930 | HFX_2510 | Oligoendopeptidase. | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. | 0.499 |
pepF | fumC | HFX_1930 | HFX_2897 | Oligoendopeptidase. | Fumarate hydratase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | 0.420 |
pepF | gdh | HFX_1930 | HFX_1090 | Oligoendopeptidase. | Glucose 1-dehydrogenase; Catalyzes the NAD(P)(+)-dependent oxidation of D-glucose to D-gluconate. Displays broad substrate specificity since it is able to catalyze the oxidation of a number of alternative aldose sugars, such as D-xylose, D-galactose, and D-fucose, to the corresponding glyconate. Can utilize both NAD(+) and NADP(+) as electron acceptor, with a preference for NADP(+). Physiologically, seems to be involved in the degradation of glucose through a modified Entner-Doudoroff pathway. | 0.455 |
pepF | hisS | HFX_1930 | HFX_1937 | Oligoendopeptidase. | histidyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.476 |
pepF | iap-2 | HFX_1930 | HFX_1931 | Oligoendopeptidase. | Putative aminopeptidase. | 0.468 |
pepF | metA | HFX_1930 | HFX_3014 | Oligoendopeptidase. | Homoserine O-acetyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine. | 0.467 |
pepF | purB | HFX_1930 | HFX_1092 | Oligoendopeptidase. | Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. | 0.486 |
pepF | ribG | HFX_1930 | HFX_1418 | Oligoendopeptidase. | 5-amino-6-(5-phosphoribosylamino)uracil reductase. | 0.457 |
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