Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HFX_1883 | pdaD | HFX_1883 | HFX_2052 | Hypothetical protein. | Pyruvoyl-dependent arginine decarboxylase. | 0.531 |
HFX_2053 | HFX_2054 | HFX_2053 | HFX_2054 | Histidine kinase. | Hypothetical protein. | 0.548 |
HFX_2053 | pdaD | HFX_2053 | HFX_2052 | Histidine kinase. | Pyruvoyl-dependent arginine decarboxylase. | 0.514 |
HFX_2054 | HFX_2053 | HFX_2054 | HFX_2053 | Hypothetical protein. | Histidine kinase. | 0.548 |
HFX_2054 | pdaD | HFX_2054 | HFX_2052 | Hypothetical protein. | Pyruvoyl-dependent arginine decarboxylase. | 0.582 |
HFX_2054 | psmR-2 | HFX_2054 | HFX_2051 | Hypothetical protein. | Proteasome-activating nucleotidase; ATPase which is responsible for recognizing, binding, unfolding and translocation of substrate proteins into the archaeal 20S proteasome core particle. Is essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C- termini of the proteasomal ATPase function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. Unfolding activity requires energy from ATP hydrolysis, whereas ATP binding alone promotes ATPase- [...] | 0.452 |
argH | pdaD | HFX_0049 | HFX_2052 | Argininosuccinate lyase. | Pyruvoyl-dependent arginine decarboxylase. | 0.800 |
argH | speB | HFX_0049 | HFX_1634 | Argininosuccinate lyase. | Arginase; Belongs to the arginase family. | 0.840 |
argH | speE | HFX_0049 | HFX_0260 | Argininosuccinate lyase. | Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine. | 0.541 |
hmgR | pdaD | HFX_2609 | HFX_2052 | hydroxymethylglutaryl-CoA reductase (NADPH) / 3-hydroxy-3-methylglutaryl-CoA reductase; Belongs to the HMG-CoA reductase family. | Pyruvoyl-dependent arginine decarboxylase. | 0.529 |
pdaD | HFX_1883 | HFX_2052 | HFX_1883 | Pyruvoyl-dependent arginine decarboxylase. | Hypothetical protein. | 0.531 |
pdaD | HFX_2053 | HFX_2052 | HFX_2053 | Pyruvoyl-dependent arginine decarboxylase. | Histidine kinase. | 0.514 |
pdaD | HFX_2054 | HFX_2052 | HFX_2054 | Pyruvoyl-dependent arginine decarboxylase. | Hypothetical protein. | 0.582 |
pdaD | argH | HFX_2052 | HFX_0049 | Pyruvoyl-dependent arginine decarboxylase. | Argininosuccinate lyase. | 0.800 |
pdaD | hmgR | HFX_2052 | HFX_2609 | Pyruvoyl-dependent arginine decarboxylase. | hydroxymethylglutaryl-CoA reductase (NADPH) / 3-hydroxy-3-methylglutaryl-CoA reductase; Belongs to the HMG-CoA reductase family. | 0.529 |
pdaD | psmR-2 | HFX_2052 | HFX_2051 | Pyruvoyl-dependent arginine decarboxylase. | Proteasome-activating nucleotidase; ATPase which is responsible for recognizing, binding, unfolding and translocation of substrate proteins into the archaeal 20S proteasome core particle. Is essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C- termini of the proteasomal ATPase function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. Unfolding activity requires energy from ATP hydrolysis, whereas ATP binding alone promotes ATPase- [...] | 0.622 |
pdaD | speB | HFX_2052 | HFX_1634 | Pyruvoyl-dependent arginine decarboxylase. | Arginase; Belongs to the arginase family. | 0.917 |
pdaD | speB1 | HFX_2052 | HFX_2309 | Pyruvoyl-dependent arginine decarboxylase. | Agmatinase; Belongs to the arginase family. | 0.947 |
pdaD | speE | HFX_2052 | HFX_0260 | Pyruvoyl-dependent arginine decarboxylase. | Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine. | 0.644 |
pdaD | usp14 | HFX_2052 | HFX_0369 | Pyruvoyl-dependent arginine decarboxylase. | Universal stress protein. | 0.542 |
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