Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HFX_0652 | arsB | HFX_0652 | HFX_2093 | Transporter. | Putative transport protein. | 0.435 |
HFX_2092 | arsB | HFX_2092 | HFX_2093 | Hypothetical protein. | Putative transport protein. | 0.625 |
HFX_2092 | nudF-2 | HFX_2092 | HFX_2091 | Hypothetical protein. | ADP-ribose pyrophosphatase, Mut/nudix family protein. | 0.571 |
arsB | HFX_0652 | HFX_2093 | HFX_0652 | Putative transport protein. | Transporter. | 0.435 |
arsB | HFX_2092 | HFX_2093 | HFX_2092 | Putative transport protein. | Hypothetical protein. | 0.625 |
arsB | kefC | HFX_2093 | HFX_2009 | Putative transport protein. | Potassium transport protein kefC. | 0.554 |
arsB | nudF-2 | HFX_2093 | HFX_2091 | Putative transport protein. | ADP-ribose pyrophosphatase, Mut/nudix family protein. | 0.466 |
arsB | nuoL-2 | HFX_2093 | HFX_1070 | Putative transport protein. | NADH dehydrogenase (quinone). | 0.679 |
kefC | arsB | HFX_2009 | HFX_2093 | Potassium transport protein kefC. | Putative transport protein. | 0.554 |
kefC | nuoL-2 | HFX_2009 | HFX_1070 | Potassium transport protein kefC. | NADH dehydrogenase (quinone). | 0.822 |
nudF-2 | HFX_2092 | HFX_2091 | HFX_2092 | ADP-ribose pyrophosphatase, Mut/nudix family protein. | Hypothetical protein. | 0.571 |
nudF-2 | arsB | HFX_2091 | HFX_2093 | ADP-ribose pyrophosphatase, Mut/nudix family protein. | Putative transport protein. | 0.466 |
nuoL-2 | arsB | HFX_1070 | HFX_2093 | NADH dehydrogenase (quinone). | Putative transport protein. | 0.679 |
nuoL-2 | kefC | HFX_1070 | HFX_2009 | NADH dehydrogenase (quinone). | Potassium transport protein kefC. | 0.822 |