Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HFX_1036 | HFX_2118 | HFX_1036 | HFX_2118 | Hypothetical protein. | Pentapeptide repeat-containing protein. | 0.532 |
HFX_2117 | HFX_2118 | HFX_2117 | HFX_2118 | Putative permease. | Pentapeptide repeat-containing protein. | 0.605 |
HFX_2117 | HFX_2119 | HFX_2117 | HFX_2119 | Putative permease. | Hypothetical protein. | 0.453 |
HFX_2118 | HFX_1036 | HFX_2118 | HFX_1036 | Pentapeptide repeat-containing protein. | Hypothetical protein. | 0.532 |
HFX_2118 | HFX_2117 | HFX_2118 | HFX_2117 | Pentapeptide repeat-containing protein. | Putative permease. | 0.605 |
HFX_2118 | HFX_2119 | HFX_2118 | HFX_2119 | Pentapeptide repeat-containing protein. | Hypothetical protein. | 0.575 |
HFX_2118 | HFX_2120 | HFX_2118 | HFX_2120 | Pentapeptide repeat-containing protein. | Hypothetical protein. | 0.443 |
HFX_2118 | gbp3 | HFX_2118 | HFX_3032 | Pentapeptide repeat-containing protein. | GTP-binding proteinlike protein. | 0.456 |
HFX_2118 | gyrB | HFX_2118 | HFX_1630 | Pentapeptide repeat-containing protein. | DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.756 |
HFX_2118 | oye2 | HFX_2118 | HFX_1557 | Pentapeptide repeat-containing protein. | Light and oxygen sensing histidine kinase. | 0.608 |
HFX_2118 | purH | HFX_2118 | HFX_1093 | Pentapeptide repeat-containing protein. | Bifunctional purine biosynthesis protein PurH. | 0.428 |
HFX_2118 | tef2 | HFX_2118 | HFX_0343 | Pentapeptide repeat-containing protein. | Translation elongation factor EF-2; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF- [...] | 0.410 |
HFX_2119 | HFX_2117 | HFX_2119 | HFX_2117 | Hypothetical protein. | Putative permease. | 0.453 |
HFX_2119 | HFX_2118 | HFX_2119 | HFX_2118 | Hypothetical protein. | Pentapeptide repeat-containing protein. | 0.575 |
HFX_2119 | HFX_2120 | HFX_2119 | HFX_2120 | Hypothetical protein. | Hypothetical protein. | 0.589 |
HFX_2120 | HFX_2118 | HFX_2120 | HFX_2118 | Hypothetical protein. | Pentapeptide repeat-containing protein. | 0.443 |
HFX_2120 | HFX_2119 | HFX_2120 | HFX_2119 | Hypothetical protein. | Hypothetical protein. | 0.589 |
gbp3 | HFX_2118 | HFX_3032 | HFX_2118 | GTP-binding proteinlike protein. | Pentapeptide repeat-containing protein. | 0.456 |
gbp3 | gyrB | HFX_3032 | HFX_1630 | GTP-binding proteinlike protein. | DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.545 |
gbp3 | tef2 | HFX_3032 | HFX_0343 | GTP-binding proteinlike protein. | Translation elongation factor EF-2; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF- [...] | 0.425 |
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