STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMH41811.1RNA cap guanine-N2 methyltransferase. (341 aa)    
Predicted Functional Partners:
SMH37325.1
F420H2 dehydrogenase subunit D.
  
 0.999
SMH37328.1
F420H2 dehydrogenase subunit C.
  
 0.999
rps5
SSU ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy.
    
 0.809
rps12
SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family.
 
 0.792
rps24e
SSU ribosomal protein S24E; Belongs to the eukaryotic ribosomal protein eS24 family.
  
 0.767
rps6e
SSU ribosomal protein S6E; Belongs to the eukaryotic ribosomal protein eS6 family.
  
 0.760
SMH40981.1
SSU ribosomal protein S3AE.
  
  0.758
rps17
SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
 0.751
SMH41827.1
SSU ribosomal protein S4E.
   
  0.749
rps15
SSU ribosomal protein S15P.
  
 0.748
Your Current Organism:
Methanohalophilus portucalensis
NCBI taxonomy Id: 523843
Other names: M. portucalensis FDF-1, Methanohalophilus portucalensis DSM 7471, Methanohalophilus portucalensis FDF-1, Methanohalophilus portucalensis str. FDF-1, Methanohalophilus portucalensis strain FDF-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.