Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB11807.1Hypothetical protein. (68 aa)    
Predicted Functional Partners:
AKB11806.1
Hypothetical protein.
 
    
0.547
AKB13144.1
Potassium voltage-gated channel subfamily KQT; Possible potassium channel, VIC family.
 
     0.529
AKB12301.1
Hypothetical protein.
  
     0.503
AKB13018.1
Hemerythrin HHE cation binding domain protein.
  
     0.483
AKB13967.1
Hypothetical protein.
  
     0.474
AKB14205.1
Hypothetical protein.
  
     0.463
AKB11953.1
Hypothetical protein.
  
     0.447
AKB13019.1
Hemerythrin HHE cation binding domain protein.
 
     0.425
AKB12147.1
Hypothetical protein.
  
     0.420
AKB14317.1
Membrane alanine aminopeptidase N.
  
     0.403
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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