Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB11820.1Cell surface protein. (368 aa)    
Predicted Functional Partners:
AKB14072.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.801
AKB11819.1
Hypothetical protein.
       0.778
AKB11817.1
Hypothetical protein.
       0.768
AKB12523.1
3',5'-cyclic-nucleotide phosphodiesterase.
     
 0.751
AKB11818.1
Hypothetical protein.
       0.615
AKB12940.1
Hypothetical protein.
     
 0.523
AKB13433.1
Hypothetical protein.
     
 0.523
AKB13438.1
Hypothetical protein.
     
 0.523
AKB13448.1
Hypothetical protein.
     
 0.523
AKB12339.1
Cell division protein FtsX.
     
 0.522
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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