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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB11823.1Cell surface protein. (747 aa)    
Predicted Functional Partners:
AKB12273.1
Peptidyl-prolyl cis-trans isomerase.
 
 
 0.709
AKB13532.1
GTP-binding protein RBG1/RBG2.
  
 
   0.669
AKB12692.1
Phospholipid-binding protein.
   
 
 0.640
AKB13796.1
Citrate synthase (si).
    
 
 0.637
AKB13901.1
Hypothetical protein.
 
     0.632
AKB12883.1
Peptidase S8 and S53, subtilisin, kexin, sedolisin.
  
 
 0.532
AKB11824.1
Hypothetical protein.
 
    0.506
AKB11926.1
Hypothetical protein.
  
 0.475
AKB11827.1
Hypothetical protein.
 
     0.447
AKB12327.1
Hypothetical protein.
 
   
 0.419
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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