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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB11827.1Hypothetical protein. (211 aa)    
Predicted Functional Partners:
AKB11826.1
Hypothetical protein.
 
     0.942
AKB12946.1
Cell surface protein.
  
     0.697
AKB13454.1
Hypothetical protein.
  
     0.690
AKB13009.1
PQQ enzyme repeat domain protein.
  
     0.689
AKB12327.1
Hypothetical protein.
  
     0.678
AKB12942.1
Hypothetical protein.
  
     0.678
AKB11798.1
Hypothetical protein.
  
     0.676
AKB13010.1
PQQ enzyme repeat domain protein.
  
     0.669
AKB13435.1
Hypothetical protein.
  
     0.665
AKB11949.1
Hypothetical protein.
  
     0.663
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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